Life Sciences

Research Assistant in Molecular Modeling Lab

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Opportunity Description

Our group specializes in molecular modeling & simulation to study biomaterials, biomechanics and biophysical processes associated with the body’s function in health and disease. We are always interested in mentoring self-motivated undergraduate students from diverse backgrounds. Multiple projects are available depending on student interest and fit.

More details on the projects can be found at: http://me.engr.uconn.edu/wp-content/uploads/2018/08/F18-REU-Anna-Tarakanova.pdf

The student will gain experience in molecular model development, atomistic modeling, coarse-graining approaches, molecular simulation setup and implementation on supercomputers, molecular visualization software, MATLAB/Python scripting, and scientific writing. The student will have a chance to participate in a collaborative project, and if successful, contribute to a scientific publication.

Research activities may include:
– Read and summarize related literature
– Build and iterate molecular models
– Perform simulations on computing cluster
– Post-process data
– Visualize and analyze data
– Meet weekly with faculty member

Commitment: 10 hours/week, including a weekly meeting with faculty member

Course credit available.

Student Qualifications
Helpful experience for all projects: Familiarity with scripting in the Linux environment, molecular modeling with molecular-dynamics-based approaches, experience with Python/MATLAB.

Preferred coursework: Differential Equations/Linear Algebra, Physics I: Mechanics/Statistical Physics, Biochemistry.

How to Apply
Interested students should email a resume/CV and a brief cover letter to anna.tarakanova@uconn.edu indicating why they are interested in this research opportunity. Please indicate whether you are interested in the Fall semester or both Fall & Spring.

Mentor: Anna Tarakanova, Assistant Professor
Department: Mechanical Engineering
Email: anna.tarakanova@uconn.edu
Timing: Fall 2018, Spring 2019
Campus: Storrs

• Research Assistant in Food Microbiology Lab

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Opportunity Description
Depending on previous experience and interest, students will assist with ongoing research projects including but not limited to identifying and optimizing natural and novel means of controlling pathogens in cheese. These include the use of GRAS antimicrobials (e.g. hydrogen peroxide, lauric arginate ethyl ester, polylysine, and acidified calcium sulfate), protective cultures of lactic acid bacteria, and modified atmosphere packaging to enhance the shelf life and safety of dairy products. When taken for credit (independent study/undergraduate research), time commitments can range from 3-15 hours per week. Duration can be short as a single semester or renewed for multiple semesters. Depending on the individual, the opportunity is also available during the semester breaks. This opportunity is not a paid position.

Student Qualifications
We are looking for someone with an interest in dairy science, food science, and/or microbiology.
Coursework in microbiology and/or previous lab experience are preferred.

How to Apply
Email Dr. D’Amico (ddamico@uconn.edu) explaining your interest. There is no deadline.

Mentor: Dennis D’Amico, Assistant Professor
Department: Animal Science
Email: ddamico@uconn.edu
Timing: Ongoing
Campus: Storrs

• Research Assistant in Biomedical/Clinical Research

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Opportunity Description
Patient outcomes research in clinical medicine utilizing large nationwide databases to investigate clinical questions related to liver disease and liver transplant. This is an opportunity for prospective students interested in being involved in biomedical research with the goal of learning and manipulating large medical databases. With the guidance of the mentor and statistical assistance, the prospective candidate will have the opportunity to participate in a research project in medicine. With the mentor, the student will develop a clinical question which can answered with the appropriate database, and gain experience proposing a hypothesis, working with statistical team, interpreting the results, and formulating conclusions from the results. There will be weekly meeting with the mentor and opportunity to have exposure to a clinical environment for those students interested to pursue careers in medicine. Work is primarily done independently with guidance, thus no specific number of hours per week commitment. One of the objectives of the project would be to allow the student to present his or her findings in a poster or oral presentation format at national meetings and eventual publication. This is currently a nonfunded volunteer position. The time commitment is variable depending on student’s proficency handling large databases.

Student Qualifications
Comfortable using excel database, be able to work independently, ability to perform online pubmed research to gather background literature on the topic, understand basic statistics

How to Apply
Please contact mentor directly;
Provide resume and letter of interest

Mentor: Raffi Karagozian, MD, Clinical Assistant Professor of Medicine
Department: Gastroenterology & Hepatology
Email: rkaragozian@sfhcp.org
Timing: Ongoing
Campus: UConn Health