UConn Research Opportunity

Research Assistant in Global Environmental Remote Sensing in the GERS Lab

Posted on May 25, 2021 by McGuire, Caroline

Opportunity Description

This research project investigates using satellite images for mapping global environmental change, climate change, and sustainability. We will use dense time series of satellite data acquired during day and night time to monitoring, assessment, and projecting landscape change at large scales. More information regarding the GERS Laboratory can be found at this link: https://gerslab.uconn.edu/

We work together with concepts from environmental science, machining learning, climate change, remote sensing, and image processing within a rich interdisciplinary field. We have several projects all focused on mapping and characterizing land change at a continental or global scale. Our lab works closely with scientists from USGS and NASA. As an undergraduate research assistant, you would aid primarily in image interpretation, as well as potentially develop algorithms for Earth observation.

You are expected to receive training to use a high-performance computing facility to process satellite data, aided by a graduate student/postdoc researcher mentor. Once you have gained the knowledge in using remote sensing data, you will be able to collect satellite data in your own interest area and apply remote sensing techniques to extract useful information. The time commitment is flexible and is minimal for a semester (renewal for the future semesters is possible and encouraged). The assistantship will start in the summer of 2021 and going forward. RAs will receive research course credits and authorship (if published) as compensation for the work.

Student Qualifications
Preferred Qualifications (but not limited to):
– Basic knowledge of remote sensing and use of satellite data (e.g., have taken the NRE Remote Sensing of Environment course)
– Experience with programming languages (Matlab, R, Python, or others).
– Strong interest in find answers to big science questions.

How to Apply
Please email zhe@uconn.edu and include a brief description of why you are applying for this position and a resume. Strong applicants will go through a virtual or face-to-face interview with the faculty.

Mentor: Zhe Zhu, Assistant Professor
Department: Natural Resources and the Environment
Email: zhe@uconn.edu
Timing: Summer 2021, Fall 2021, Spring 2022, Ongoing
Campus: Storrs

• Undergraduate Research in Cell Biology

Posted on December 15, 2020 by McGuire, Caroline

Opportunity Description

Preclinical research in cancer therapeutics. Our lab in collaboration with with a small biotech company pioneered the use of high-Z nanoparticles to enhance radiation therapy of cancers–with a special emphasis on brain cancers–both primary gliomas and metastatic brain tumors. Our original work was done with gold nanoparticles. We are currently working with iodine nanoparticles. Full-time summer research and 9 hrs/week course research in fall and spring are available.

Please go to our Cell Biology web site to see a short description of our lab’s interests and most of our publications since 2000. The attached link is a virtual talk I gave at the most recent Society for NeuroOncology meeting. https://www.dropbox.com/s/hrxqzdsf3hqngno/Henery%2011.01.2020.mp4?dl=0

If you think you might have interest in our lab, e-mail smilowitz@uchc.edu and I can discuss specific projects. Many of the students who intern in our lab publish with us as co-authors.

Student Qualifications
Looking for responsible, very talented students with strong performance in STEM and strong work ethic.
Prefer students interested in a career in medicine (getting MD) or research (getting PhD)
Prefer rising seniors who wish to pursue a senior thesis, but open to rising juniors and sophomores.
Prefer previous lab experience, but open to students that have had course lab experience
Prefer students who are facile with instrumentation and have good computer skills.
Prefer students who are open to working with lab animals.

How to Apply
Please forward the following items to Dr. Smilowitz via email to smilowitz@uchc.edu.

1. Resume
2. Transcript
3. Personal letter with interests, motivations, long-term goals and availability for this research experience
4. At least one letter of recommendation from someone who knows you well

Mentor: Henry Smilowitz, Associate Professor
Department: Cell Biology
Email: smilowitz@uchc.edu
Timing: Ongoing – provisionally available for Spring 2021 (will depend on Covid situation)
Campus: UConn Health (Farmington)

• Research Opportunity – REINVENT-PT Lab

Posted on October 30, 2020October 30, 2020 by Eskin, Jodi

Opportunity Description

Join the REINVENT-PT lab (REhabilitation, INnoVations & Emerging Novel Technologies in Physical Therapy lab in Spring 2021! Our lab is interested in understanding developmental trajectories of individuals with developmental disabilities including Autism, Cerebral Palsy, Down syndrome, etc., across the lifespan.

Specifically, our lab studies how infants and children with developmental disabilities explore their physical and social environment compared to typically developing infants and the cascading effects of motor difficulties on a child’s social communication and cognitive development. Our lab develops novel, movement-based interventions for school-age children with Autism Spectrum Disorder (ASD) and assesses the effects of these play and creative movement-based interventions on children’s motor, social communication, behavioral, and cognitive skills. We are also interested in assessing health-related outcomes in adolescents and young adults with developmental disabilities including their physical activity and physical fitness levels. Based on our understanding of the developmental trajectories of individuals with disabilities, our goal is to develop multisystem, evidence-based, behavioural interventions and assistive technologies to empower the lives of people with disabilities.

At present, the lab has 2 ongoing research projects – (1) assessing the effects of 8-week, telehealth-based creative movement interventions on social communication, motor and cognitive skills of school-age children with ASD, and (2) assessing physical activity and physical fitness levels in adolescents and adults with developmental disabilities and development of novel, engaging group-based intervention programs to improve health-related outcomes in this population

Student Qualifications
We are looking for passionate, energetic, and empathetic undergraduate students interested in working on projects involving infants, children, and adults with disabilities. Students can pursue research at the lab for credit, for work study, and with the potential of converting a subset of the research into a thesis. Students are required to commit to pursuing research in the lab for at least 2 semesters in order for the experience to be meaningful for students. Students from diverse backgrounds including but not limited to psychology, physiology and neurobiology, biology, exercise science, communication sciences, allied health, and education are encouraged to apply.

How to Apply
To apply, please contact Dr. Sudha Srinivasan at sudha.srinivasan@uconn.edu. Please also feel free to email with questions!

Mentor: Sudha Srinivasan, Assistant Professor
Department: Kinesiology
Email: sudha.srinivasan@uconn.edu
Campus: Storrs

Research Assistant for Thermodynamic Foundations of Biological Behavior

Posted on January 13, 2020December 4, 2020 by Eskin, Jodi

Opportunity Description

This research project investigates bio-like properties and behaviors of non-living, self-organizing, physical systems called dissipative structures. The project aims at identifying core physical principles which underwrite biological capabilities by studying non-living bio-analogues. The primary system we study is an electrically driven dissipative structure (as an example watch the video here: https://www.youtube.com/watch?v=nxoZ0hHN12I).

We braid together concepts from psychology, cognitive science, kinesiology, physics, chemistry, and thermodynamics for a rich interdisciplinary methodology. This project is thus well-suited for undergraduates studying either the life-sciences or the physical sciences, and ideally an interest in both. Our projects for the near future include topics of evolution, learning, and social coordination. As an undergraduate research assistant, you would aid primarily in conducting experiments, as well as potentially designing and building experimental apparatuses. Ideally you will also learn some rudimentary data analysis tools in Matlab, R, or both (programming facility in other languages is also very welcome).

You would receive training to use the experimental systems, aided by a graduate student mentor, as well as a short survey of relevant research articles for conceptual background. Once you have developed some facility with the system, you would begin to run assigned experiments and collect data on your own. You would be expected to coordinate primarily with your graduate student mentor, and secondarily with your faculty mentor. The time-commitment is flexible and negotiable, likely not exceeding 10 hours a week. The assistant position is minimally for a semester, though renewal for future semesters is possible and ideal. The assistantship would begin at the start of the Spring 2020 semester. RAs will receive research course credits as compensation for their work.

Student Qualifications
Preferred Qualifications (but not required):
– Undergraduate-level physics knowledge (especially Thermodynamics and Electricity & Magnetism)
– Experience with programming languages (ideally Matlab and/or R)
– An interest in conducting future research
Required Qualifications:
– Good, consistent, work ethic
– Genuine interest in the topic (though you don’t need specific knowledge or experience)
– Desire to learn new concepts, experimental methodologies, and analysis tools

How to Apply
Please email Ben De Bari at Benjamin.de_bari@uconn.edu and include a brief description of why you’re applying for this position and an up-to-date resume. Strong applicants will go through a brief interview process with the graduate student (Ben De Bari) and faculty (James Dixon) mentors.

Mentor: James Dixon, Professor, Psychological Sciences
Mentor email: james.dixon@uconn.edu
Timing: Ongoing
Campus: Storrs

Bioinformatic Research Assistant

Posted on January 25, 2019 by Eskin, Jodi

Opportunity Description

This is an opportunity to learn some of the computational and bioinformatic tools used in genomics.

The project is to study the genetic basis of evolutionary adaptation using whole genome sequence data and functional genomic data (RNA-seq). The study system is a pair of coastal fish species in the genus Fundulus that inhabit a wide range of salinities. A probable chromosomal inversion exists which is shared by the two species, associated with environmental salinity and encompasses a critical osmoregulatory gene. The project will confirm the presence of the inversion and analyze genetic and gene expression data from genes it encompasses from multiple populations of each species.

The work is entirely computational in nature, as the data have already been collected. The student would be expected to learn the basics of analyzing genetic variation data, gene expression data, and identifying structural variants from whole genome sequence data.

The expected time commitment would be 10-15 hours per week. Taking the project to completion would likely require two semesters.

Student Qualifications
Applicants should have some prior experience using the linux command line interface, and ideally some experience with the statistical computing language R. Prior coursework should include genetics.

How to Apply
Available immediately.

Please contact Noah Reid at noah.reid@uconn.edu

Applicants should submit a resume, and explain relevant coursework and prior experience related to bioinformatics (e.g. experience using command line interfaces, scripting languages, etc).

Mentor: Noah Reid, Assistant Research Professor
Department: Molecular and Cell Biology
Email: noah.reid@uconn.edu
Timing: Spring 2019
Campus: Storrs

Research Assistant in Accent/Dialect Study

Posted on December 20, 2018 by Eskin, Jodi

Opportunity Description

Are you interested in accents or phonetics? Are you great with computers or music theory? This position involves assisting with research into the intonation patterns of various accents, specifically finding pitch relationships in particular speech utterances. There is also an opportunity to attend regular meetings with a faculty mentor and discuss relevant literature and research experiences in order to foster your education in the field.

This opportunity can be taken for course credit, or as a Work Study position (only for students with a federal Work-Study award), and runs in Spring Semester 2019. Students earning course credit can negotiate weekly hours (3 hours for 1 credit, 6 hours for 2 credits, 9 hours for 3 credits). Work-study students work 8-10 hours per week.

The role includes:
* Helping to recruit volunteer speakers of specific accents and request accent samples
* Assisting with recording sound samples from on-campus volunteers
* Orthographic (not phonetic) transcription of spoken samples from sound files
* Analyzing sound samples for fundamental frequency and musical interval relationships using appropriate software (e.g. Adobe Audition). Take screenshots and annotate with appropriate information. Record and organize this data.
* Assist in gathering and organizing related literature for review
* Read and summarize related literature
* Undergo online CITI Program Training Course (if required by IRB). This is online and takes less than 2 hours.
* Perform miscellaneous duties as directed

Student Qualifications
Skills/Qualifications required:
* Have excellent computer skills
* Have excellent communication skills
* Have great organizational skills and motivation

Preferred qualifications:
* Experience/education in any or all of phonetics, accents, linguistics, speech, music, sound engineering, computer science.

How to Apply
Please email your application to jennifer.scapetis@uconn.edu and include:
* Cover Letter (please write about why you would be good at the job and why it interests you)
* Resume
* References (Email or telephone numbers)

Looking to fill this position ASAP. Open until filled.

Mentor: Jennifer Scapetis-Tycer, Assistant Professor
Department: Drama
Email: jennifer.scapetis@uconn.edu
Timing: Spring 2019
Campus: Storrs

Research Assistant in Molecular Modeling Lab

Posted on August 15, 2018 by McGuire, Caroline

Opportunity Description

Our group specializes in molecular modeling & simulation to study biomaterials, biomechanics and biophysical processes associated with the body’s function in health and disease. We are always interested in mentoring self-motivated undergraduate students from diverse backgrounds. Multiple projects are available depending on student interest and fit.

More details on the projects can be found at: http://me.engr.uconn.edu/wp-content/uploads/2018/08/F18-REU-Anna-Tarakanova.pdf

The student will gain experience in molecular model development, atomistic modeling, coarse-graining approaches, molecular simulation setup and implementation on supercomputers, molecular visualization software, MATLAB/Python scripting, and scientific writing. The student will have a chance to participate in a collaborative project, and if successful, contribute to a scientific publication.

Research activities may include:
– Read and summarize related literature
– Build and iterate molecular models
– Perform simulations on computing cluster
– Post-process data
– Visualize and analyze data
– Meet weekly with faculty member

Commitment: 10 hours/week, including a weekly meeting with faculty member

Course credit available.

Student Qualifications
Helpful experience for all projects: Familiarity with scripting in the Linux environment, molecular modeling with molecular-dynamics-based approaches, experience with Python/MATLAB.

Preferred coursework: Differential Equations/Linear Algebra, Physics I: Mechanics/Statistical Physics, Biochemistry.

How to Apply
Interested students should email a resume/CV and a brief cover letter to anna.tarakanova@uconn.edu indicating why they are interested in this research opportunity. Please indicate whether you are interested in the Fall semester or both Fall & Spring.

Mentor: Anna Tarakanova, Assistant Professor
Department: Mechanical Engineering
Email: anna.tarakanova@uconn.edu
Timing: Fall 2018, Spring 2019
Campus: Storrs